Query ENCODE SCREEN cCREs for a genomic region
Usage
query_encode_ccres(
locus_chr,
locus_start,
locus_end,
assembly = "grch38",
biosample = NULL,
cell_type = NULL
)Arguments
- locus_chr
Chromosome (e.g., "chr1")
- locus_start
Start position
- locus_end
End position
- assembly
Genome assembly ("grch38" or "mm10")
- biosample
Optional biosample ID for cell-type-specific filtering (e.g., "GM12878_ENCDO000AAK")
- cell_type
Optional cell type name for filtering (e.g., "GM12878"). If provided, will be converted to biosample ID.