LocusZoom-style plot for GWAS results
Usage
locuszoom(
x,
locus_chr,
locus_start,
locus_end,
include_ccres = FALSE,
ccre_biosample = NULL,
ccre_cell_type = NULL,
...
)
# S3 method for class 'GWASFormatter'
locuszoom(
x,
locus_chr,
locus_start,
locus_end,
include_ccres = FALSE,
ccre_biosample = NULL,
ccre_cell_type = NULL,
...
)
# S3 method for class 'data.frame'
locuszoom(
x,
locus_chr,
locus_start,
locus_end,
include_ccres = FALSE,
ccre_biosample = NULL,
ccre_cell_type = NULL,
...
)Arguments
- x
A GWASFormatter object or a data.frame/tibble containing GWAS results.
- locus_chr
Chromosome of the locus to plot (e.g., 'chr1').
- locus_start
Start position of the locus (integer).
- locus_end
End position of the locus (integer).
- include_ccres
Logical, whether to include ENCODE SCREEN cCREs track. Default is FALSE.
- ccre_biosample
Optional biosample ID for biosample-specific cCRE filtering (e.g., "GM12878_ENCDO000AAK").
- ccre_cell_type
Optional cell type name for cCRE filtering (e.g., "GM12878"). Will be converted to biosample ID.
- ...
Additional arguments passed to methods.