Annotate data with centromere information
Usage
annotate_with_centromere(x, ...)
# S3 method for class 'data.frame'
annotate_with_centromere(x, chrom_col = "CHROM", pos_col = "POS", ...)
# S3 method for class 'tbl_df'
annotate_with_centromere(x, ...)
# S3 method for class 'GWASFormatter'
annotate_with_centromere(x, ...)
Arguments
- x
A data frame or tibble containing variant data.
- ...
Additional arguments passed to methods.
- chrom_col
Name of the column containing chromosome information. Default is "CHROM".
- pos_col
Name of the column containing position information. Default is "POS".
Value
A data frame with the centromere information.
Methods (by class)
annotate_with_centromere(data.frame): Annotate a data frame or tibble with centromere information
annotate_with_centromere(tbl_df): Alias for the data.frame method
annotate_with_centromere(GWASFormatter): Centromere annotation method for GWASFormatter objects